PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g26910.2.p
Common NameBRADI_3g26910, LOC100828004
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 430aa    MW: 46983.8 Da    PI: 8.6102
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g26910.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-0592114123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C+k F r  nL+ H r H
  Bradi3g26910.2.p  92 FVCEICNKGFQRDQNLQLHRRGH 114
                       89*******************88 PP
2zf-C2H213.30.00025186208123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC+ Cgk++  +s+ k H +++
  Bradi3g26910.2.p 186 WKCERCGKRYAVHSDWKAHVKNC 208
                       58******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-891114No hitNo description
Gene3DG3DSA:3.30.160.601.4E-591114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94992114IPR007087Zinc finger, C2H2
SMARTSM003550.01792114IPR015880Zinc finger, C2H2-like
PfamPF121716.6E-592114IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SMARTSM0035596151181IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4174206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.1E-8181206No hitNo description
SMARTSM0035593186206IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MMLSDLSSDQ EATGSNSHGG GGDVVLSNQH VLLNPLFAPA QHQQALLLRP APQLEQQPMA  60
GGKRKRSQPG NPDPGAEVIA LSPRALVATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL  120
RQRSSSLQAP HSKQLGLGLG GGGDGPRKRV YVCPEPSCVH HDPARALGDL TGIKKHFSRK  180
HGEKRWKCER CGKRYAVHSD WKAHVKNCGT REYRCDCGIL FSRKDSLLTH RAFCDALAEE  240
SARILAAANN SSTSNNSNII NNNNNSVGSS SNNLLSPPPA LFPTFSSHAQ NPNPLMFLSE  300
ETHYHHHHQQ EQLLPPFQPQ YSYLSHVDLP ISSAITSGVS AFDTDRDTLS FGLTPEGSVT  360
MHAGGRRGLT RDFLGAGEVV EDQLQMPLCS AAAYQGRPVA TAVCCATTDL TRQYLGRLPP  420
VSETWSHHF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00673SELEXTransfer from GRMZM2G011357Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3286011e-106DQ328601.1 Lolium multiflorum putative zinc finger protein ID1 (ID1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234737.10.0PREDICTED: protein indeterminate-domain 12-like
SwissprotO227596e-98IDD12_ARATH; Protein indeterminate-domain 12
SwissprotQ700D22e-97IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A0Q3HTA80.0A0A0Q3HTA8_BRADI; Uncharacterized protein
STRINGBRADI3G26910.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130962832
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.12e-96indeterminate(ID)-domain 7